Here's an example with a good set of basic installations for R 4.0.2: NOTE: These instructions are written to be performed on Mox (Hyak).Įxample filename: rstudio-4.0.2.sjw-v1.0.def Mkdir -p ' $TMPDIR /var/run' # User-installed R packages go into their home directory if [ ! -e $ -auth-none = 0 -auth-pam-helper-path =pam-helper # Set container path container_path = '/gscratch/srlab/programs/singularity_containers' # Set container name container = 'rstudio-4.0.2.sjw-v1.0.sif' # MAKE NO CHANGES BELOW THIS LINEĮxport PASSWORD = $(openssl rand -base64 15 ) # get unused socket per # tiny race condition between the python & singularity commands readonly PORT = $(python -c 'import socket s=socket.socket() s.bind(('', 0)) print(s.getsockname()) s.close()' )Ĭat 1> & 2 ' $TMPDIR /tmp/rstudio-server/secure-cookie-key'Ĭhmod 0600 ' $TMPDIR /tmp/rstudio-server/secure-cookie-key'

#!/bin/bash # Job Name #SBATCH -job-name=rstudio_server_test # Allocation Definition #SBATCH -account=srlab #SBATCH -partition=srlab # Resources # Nodes #SBATCH -nodes=1 # Walltime (days-hours:minutes:seconds format) #SBATCH -time=0-08:00:00 # Memory per node #SBATCH -mem=100G #SBATCH -signal=USR2 #turn on e-mail notification #SBATCH -mail-type=ALL #SBATCH -mail-user= # Specify the working directory for this job #SBATCH -chdir= # Set user-defined variables inside this box. Here's an example of how you can both Shiny and RStudio running on the same domain using SSL and Nginx.Create/customize your own Singularity Rstudio Server container

Rstudioserver